CDS

Accession Number TCMCG051C25126
gbkey CDS
Protein Id XP_024462224.1
Location complement(join(4109733..4109992,4110253..4110502,4111076..4111362,4111732..4111999,4112391..4112604,4112948..4113009,4113260..4113404,4113623..4113745,4113827..4113978,4114069..4114347))
Gene LOC7494488
GeneID 7494488
Organism Populus trichocarpa

Protein

Length 679aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA17973
db_source XM_024606456.1
Definition nuclear pore complex protein NUP88 isoform X3 [Populus trichocarpa]

EGGNOG-MAPPER Annotation

COG_category UY
Description Nuclear pore component
KEGG_TC 1.l.1
KEGG_Module M00427        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko03019        [VIEW IN KEGG]
KEGG_ko ko:K14318        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03013        [VIEW IN KEGG]
map03013        [VIEW IN KEGG]
GOs GO:0000054        [VIEW IN EMBL-EBI]
GO:0000055        [VIEW IN EMBL-EBI]
GO:0000056        [VIEW IN EMBL-EBI]
GO:0002376        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0005215        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005635        [VIEW IN EMBL-EBI]
GO:0005643        [VIEW IN EMBL-EBI]
GO:0006403        [VIEW IN EMBL-EBI]
GO:0006405        [VIEW IN EMBL-EBI]
GO:0006406        [VIEW IN EMBL-EBI]
GO:0006606        [VIEW IN EMBL-EBI]
GO:0006611        [VIEW IN EMBL-EBI]
GO:0006810        [VIEW IN EMBL-EBI]
GO:0006886        [VIEW IN EMBL-EBI]
GO:0006913        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006952        [VIEW IN EMBL-EBI]
GO:0006955        [VIEW IN EMBL-EBI]
GO:0008104        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009605        [VIEW IN EMBL-EBI]
GO:0009607        [VIEW IN EMBL-EBI]
GO:0009627        [VIEW IN EMBL-EBI]
GO:0009814        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0012505        [VIEW IN EMBL-EBI]
GO:0015031        [VIEW IN EMBL-EBI]
GO:0015833        [VIEW IN EMBL-EBI]
GO:0015931        [VIEW IN EMBL-EBI]
GO:0017038        [VIEW IN EMBL-EBI]
GO:0022613        [VIEW IN EMBL-EBI]
GO:0031503        [VIEW IN EMBL-EBI]
GO:0031967        [VIEW IN EMBL-EBI]
GO:0031975        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033036        [VIEW IN EMBL-EBI]
GO:0033365        [VIEW IN EMBL-EBI]
GO:0033750        [VIEW IN EMBL-EBI]
GO:0034504        [VIEW IN EMBL-EBI]
GO:0034613        [VIEW IN EMBL-EBI]
GO:0042254        [VIEW IN EMBL-EBI]
GO:0042886        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043207        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0044085        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045087        [VIEW IN EMBL-EBI]
GO:0045184        [VIEW IN EMBL-EBI]
GO:0046907        [VIEW IN EMBL-EBI]
GO:0050657        [VIEW IN EMBL-EBI]
GO:0050658        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051028        [VIEW IN EMBL-EBI]
GO:0051168        [VIEW IN EMBL-EBI]
GO:0051169        [VIEW IN EMBL-EBI]
GO:0051170        [VIEW IN EMBL-EBI]
GO:0051179        [VIEW IN EMBL-EBI]
GO:0051234        [VIEW IN EMBL-EBI]
GO:0051236        [VIEW IN EMBL-EBI]
GO:0051640        [VIEW IN EMBL-EBI]
GO:0051641        [VIEW IN EMBL-EBI]
GO:0051649        [VIEW IN EMBL-EBI]
GO:0051656        [VIEW IN EMBL-EBI]
GO:0051704        [VIEW IN EMBL-EBI]
GO:0051707        [VIEW IN EMBL-EBI]
GO:0070727        [VIEW IN EMBL-EBI]
GO:0071166        [VIEW IN EMBL-EBI]
GO:0071426        [VIEW IN EMBL-EBI]
GO:0071427        [VIEW IN EMBL-EBI]
GO:0071428        [VIEW IN EMBL-EBI]
GO:0071702        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071705        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0072594        [VIEW IN EMBL-EBI]
GO:0098542        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGAGATTCAACTTCGACTTAACAGAATCAAACCCAAACTCTTCTTCTCGAAAATCCCTAACTCCCAAAGAAGATATCCAATGGGTTCCACTCCAAAACCACCCACTCTTCGCTTCTTCCGACGAAGACACCGCACCTCGATCACCATCTAATCTACTAGCTTGGGACTGCGCTTCTAGATTTTACTATTGGGATTCAAACCTCCGTTGCCTCCATCGAATTTCTATTCGGCTCGGAGATCCCGAACCTTCCTCTGTCCTTGCTGCCTCTCTTTCTAAGGTACTGCAAACTGATGCGGAGATTAATTTTGAGGTTAATAAAATTTCTATAAATAGAAATGGCTCTGCGATGGTTCTCTCCGGCACCAATGGTTTATGTGTTATGTATCTCTATGGACGCTCTTTTGGTAAAGATAACGCCATTGTTTGCAGGACCGTGTCCATTGGTTCACAAATTTATTTTAATGAGAGCAATGTAATACGGACGCGAAGAGTTTCGTGGCATCCTTACAGTGATGCGCATTTAGGAATTCTTTCTTCTGATTCAGTTTTCCGATTGTTTGACTTGTCTTCAGATGTCCTGAAGCCAGAGCAGGAATATTATCTACAGCCTGTTGAACCAGGTAGATCCAGGAATGCTGCATCAATCTGTCCTGTTGATTTTTCTTTTGGGGGCGATCACTTGTGGGACAGATTTAGTGTTTTCCTATTATTTAGTGATGGTTCAGTTTACATTCTTTGCCCAATTGTTCCATTTGGAAGTGTCCACAAATGGGAATCTGTGTTGGAGATATATAGTGATGCTGAAACATTTGGACTGAAATCAGCAAATCCAGTTGCTGTAAATAACTCAAATCGGGCAATCTCTTGGTTGGAAGCAACATTTCCCGAGTTAGCCCATGAATCAAAGGAGGGGGGGTTATCAACACTAAAAGCTCATCCTTATGCTGTATTTGATGCATCACTTTGTTTGCAGGGCCCTCTACGCAAAGTACATCATGGTGGGGAAGATGAAGACCCAGCAGTCAGTGTTGCAGAATGCGAAGGTCGTGCAATCAGTTTTCTCTATGATTTAGCCAGCAAAGACTCAATTCTGGTGACTGCCTGGAGTGGTGGGCAGATGCAAATAGACGCCCTAGCTGATGAAATCCAGCCAGTCTGGATGGTTGGTAGCCCACCTCGTCTTCGTGTTAATTCCCAAGACCATATTATCGGTCTTGCAATGCTTTGTGAGTCTATCTCAGTGATTACTTCCAATCAAGAATGTGTTGTGCTAGAAATGAGAACATTAAATTTATTGTTACCTGTACATGTTGACATGGAGAAGAAATCTGAAACTGTGGAAGAATGGACAAATAGAAATCCTCCAGACATCATAAGCAAAGAACTACTTATTGGTCCTAAGGTGGTTCTTGTTCCTCAGGGTTCACCAAATCTTCGATCTGTTGCTGCTGATTCTATTGAAGGCCGGTCAACTCTTCACCAGTACCTAAACCTTTTCCATGAAAACTATGTCGAGTATGCACATAAGGTCTACTTTGAACTGGAGCATCATGGCCCCCGGTTGAAGAGAATCATTGATGATCAGCATGCTCGATTAGGTGAAGCACAGGAGAAACTTTCAAAAGTGAGGAGGAAGCAGTCAGGATTGGAGGACAGGATTAATAATGCAATGCACCAACACAATCTTCTGGAACAGCGCTTGCATTGCTTGAAGAACTTGCCTGGGGCTCATAAGAAGCCTTTGTCTAAAGCAGAACGTGAATTTAAGTCTGAGCTTGACCATTTTACAGGAGTTGGATTGGATGCTTTGCGTACTTCCATTGATACCTTAAGAGCAAGGCTGAGAAGGTTCACCCAATCTTCGAAAGGTGATGTAGCAAATCAGCAAATGAAAATAGGGGGGAGGAATTATGCTCTAGATGCCCAAATATTGCAGCTGAAATCCTCAATTGCGAAACTCTCGCTTCTCAATAGTGAGAATACAAAGAAAGTTAAGCTTGTTGAATCCGTGTTAAAAAATCAGGAAAGCAGTAGATGA
Protein:  
MRFNFDLTESNPNSSSRKSLTPKEDIQWVPLQNHPLFASSDEDTAPRSPSNLLAWDCASRFYYWDSNLRCLHRISIRLGDPEPSSVLAASLSKVLQTDAEINFEVNKISINRNGSAMVLSGTNGLCVMYLYGRSFGKDNAIVCRTVSIGSQIYFNESNVIRTRRVSWHPYSDAHLGILSSDSVFRLFDLSSDVLKPEQEYYLQPVEPGRSRNAASICPVDFSFGGDHLWDRFSVFLLFSDGSVYILCPIVPFGSVHKWESVLEIYSDAETFGLKSANPVAVNNSNRAISWLEATFPELAHESKEGGLSTLKAHPYAVFDASLCLQGPLRKVHHGGEDEDPAVSVAECEGRAISFLYDLASKDSILVTAWSGGQMQIDALADEIQPVWMVGSPPRLRVNSQDHIIGLAMLCESISVITSNQECVVLEMRTLNLLLPVHVDMEKKSETVEEWTNRNPPDIISKELLIGPKVVLVPQGSPNLRSVAADSIEGRSTLHQYLNLFHENYVEYAHKVYFELEHHGPRLKRIIDDQHARLGEAQEKLSKVRRKQSGLEDRINNAMHQHNLLEQRLHCLKNLPGAHKKPLSKAEREFKSELDHFTGVGLDALRTSIDTLRARLRRFTQSSKGDVANQQMKIGGRNYALDAQILQLKSSIAKLSLLNSENTKKVKLVESVLKNQESSR